Reconstructing an Epidemic Over Time

Jilles Vreeken

Abstract

We consider the problem of reconstructing an epidemic over time, or, more general, reconstructing the propagation of an activity in a network. Our input consists of a temporal network, which contains information about when two nodes interacted, and a sample of nodes that have been reported as infected. The goal is to recover the flow of the spread, including discovering the starting nodes, and identifying other likely-infected nodes that are not reported. The problem we consider has multiple applications, from public health to social media and viral marketing purposes. Previous work explicitly factor-in many unrealistic assumptions: it is assumed that (a) the underlying network does not change;(b) we have access to perfect noise-free data; or (c) we know the exact propagation model. In contrast, we avoid these simplifications: we take into account the temporal network, we require only a small sample of reported infections, and we do not make any restrictive assumptions about the propagation model. We develop CulT, a scalable and effective algorithm to reconstruct epidemics that is also suited for online settings. CulT works by formulating the problem as that of a temporal Steiner-tree computation, for which we design a fast algorithm leveraging the specific problem structure. We demonstrate the efficacy of the proposed approach through extensive experiments on diverse datasets.